Index

C

Cluster (class in crystal_torture) clusters_from_file() (in module crystal_torture.pymatgen_interface) clusters_from_structure() (in module crystal_torture.pymatgen_interface)

count_sites() (in module crystal_torture.pymatgen_doping) create_halo() (in module crystal_torture.pymatgen_interface) crystal_torture.pymatgen_doping (module) crystal_torture.pymatgen_interface (module)

D

dope_structure() (in module crystal_torture.pymatgen_doping)

dope_structure_by_no() (in module crystal_torture.pymatgen_doping)

G

get_all_neighbors_and_image() (in module crystal_torture.pymatgen_interface) Graph (class in crystal_torture)

graph_from_file() (in module crystal_torture.pymatgen_interface) graph_from_structure() (in module crystal_torture.pymatgen_interface) grow_cluster() (crystal_torture.Cluster method)

I

index_sites() (in module crystal_torture.pymatgen_doping)

is_neighbour() (crystal_torture.Cluster method)

M

map_index() (in module crystal_torture.pymatgen_interface) merge() (crystal_torture.Cluster method)

minimal_cluster (in module crystal_torture) minimal_clusters (crystal_torture.Graph attribute)

N

Node (class in crystal_torture)

nodes_from_structure() (in module crystal_torture.pymatgen_interface)

O

output_clusters() (crystal_torture.Graph method)

R

return_frac_percolating() (crystal_torture.Graph method) return_index_node() (crystal_torture.Cluster method)

return_key_nodes() (crystal_torture.Cluster method) return_periodic_structure() (crystal_torture.Graph method) return_uc_indices() (crystal_torture.Cluster method)

S

set_cluster_periodic() (in module crystal_torture.pymatgen_interface) set_fort_nodes() (in module crystal_torture.pymatgen_interface)

set_minimal_clusters() (crystal_torture.Graph method) set_site_tortuosity() (crystal_torture.Graph method) sort_structure() (in module crystal_torture.pymatgen_doping)

T

torture() (crystal_torture.Graph method) torture_fort() (crystal_torture.Cluster method)

torture_py() (crystal_torture.Cluster method) (crystal_torture.Graph method)